If I start a subsidiary under an S Corp, will I have to file taxes as one entity or as separate ones? Thanks.?

The subsidiary will serve a different market than the "mother" company, but we would like to keep the accounting as straightforward as possible. If we spin off the subsidiary in the future, what are our tax implications. Thanks again.

Answer:
It depends. Subsidiary means that it is owned by the parent, in this case, the S corporation. It can be wholly owned, or predominantly owned. It need not necessarily be an S corporation. It could be a C corporation, in which case, it is a taxPAYER as well as a tax reporting entity. Or, it could be another S corporation, or an LLC. If the subsidiary is a C corporation, then it would be a separate taxpayer and you would have to file separately.

The tax ramifications of a spin-off depend so much on the nature of the subsidiary, the question is too diverse for a reasonable length answer here.
The stock spinoff will be nontaxable. The sub will need a separate tax number so the IRS will be expecting a separate Form 1120-S. All income of sub will be taxed to mother company. That is simple.
You will have to separate the accounting and taxes of the subsidiary since the sub will be a C corp and taxed differently. I would question whether a subsidiary is really necessary. Could you achieve a "spin-off" via specific contracts rather than a separate legal entity?

"Prior to 1997, an S corporations could not have subsidiaries, and could not be a member of an affiliated group of corporations. As of 1997, an S corporation can hold qualifying wholly owned subsidiaries and can own 80 percent or more of the stock of a C corporation. The C corporation subsidiary can elect to join in the filing of a consolidated return with its affiliated C corporations, but the S corporation cannot join in the election."
I believe that for c corps the subsidiary has to be at least 80% owned to file as one. Please research for S corps.

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